Export all glycan structures to figures — export

This function calls draw_cartoon() on each glycan structure in x, then calls save_cartoon() to save a figure for each of them. IUPAC-condensed nonmenclatures are used as file names.

Usage

export_cartoons(
  x,
  dirname,
  file_ext = "png",
  dpi = 300,
  show_linkage = TRUE,
  orient = c("H", "V")
)

Arguments

x: A glyexp::experiment(), a glyrepr::glycan_structure() vector, or a character vector of any glycan structure text nomenclatures supported by glyparse::auto_parse().
dirname: Directory name to save the cartoons.
file_ext: File extention supported by ggplot2::ggsave(). Defaults to "png".
dpi: Dots per inch. Defaults to 300.
show_linkage: Show linkage annotation or not. Default is TRUE.
orient: The orientation of glycan structure. "H" for horizontal, "V" for vertical. Default is "H"

Value

The function returns the list of cartoons implicitly.

Examples

if (FALSE) { # \dontrun{
library(glyexp)
export_cartoons(real_experiment, "path/to/save")
} # }