Helper function to prepare the universe parameter

This function extracts all detected proteins in a glyexp::GlycoproteomicSE() or a glystats result. It can be readily passed to the universe parameter of all glyfun functions.

Usage

detected_universe(x)

Arguments

x

A glyexp::GlycoproteomicSE() or a glystats result.

Value

A character vector of protein UniProt IDs.

Examples

library(glyexp)
gp_se <- real_experiment
universe <- detected_universe(gp_se)
length(universe)
#> [1] 4262
universe[1:5]
#> [1] "P08185" "P04196" "P04196" "P04196" "P10909"