Step: Quantify Dynamic Motifs

Quantify glycan motifs using glydet::quantify_motifs() with glymotif::dynamic_motifs(). This extracts all possible motifs from glycan structures. Works with any glycan type.

This step requires exp (experiment data).

Usage

step_quantify_dynamic_motifs(max_size = 3, method = "relative")

Arguments

max_size

Maximum size of motifs to extract. Default is 3.

method

Method for motif quantification ("relative" or "absolute"). Default is "relative".

Value

A glysmith_step object.

Details

Data required:

• exp: The experiment to quantify motifs for

Data generated:

• dynamic_motif_exp: The experiment with quantified motifs

Tables generated:

• dynamic_motifs: A table containing the quantified motifs.

AI Prompt

This section is for AI in inquire_blueprint() only.

• Include this step if motif analysis is needed for non-N-glycans or when comprehensive motif extraction is desired.

• This step should be followed by DEA and visualization steps.

See also

glydet::quantify_motifs(), glymotif::dynamic_motifs()

Examples

step_quantify_dynamic_motifs()
#> <step "step_quantify_dynamic_motifs()"> Dynamic motif quantification