Plots for Glycoverse Data Containers

Visualization for glyexp::GlycomicSE(), glyexp::GlycoproteomicSE(), and other compatible SummarizedExperiment objects. Possible types of plots:

• "heatmap": (Default) Expression heatmap with columns as samples and rows as variables.

• "boxplot": Boxplot of expression values for each sample.

Usage

# S3 method for class 'glyexp_experiment'
autoplot(object, type = "heatmap", group_col = "group", ...)

# S3 method for class 'SummarizedExperiment'
autoplot(object, type = "heatmap", group_col = "group", ...)

Arguments

object

A supported Glycoverse data container.

type

The type of plot, one of "heatmap" (default) or "boxplot".

group_col

A character string specifying where to find the group information. It should be a column in the sample information tibble. Defaults to "group". Only applicable to "boxplot".

...

Ignored.

Value

A ggplot object.