
Plots for Limma Result
autoplot.glystats_limma_res.Rd
Visualization for results from glystats::gly_limma()
(glystats_limma_res
objects).
Only 2-group comparison is supported, and a volcano plot is drawn.
Usage
# S3 method for class 'glystats_limma_res'
autoplot(
object,
log2fc_cutoff = 1,
p_cutoff = 0.05,
p_col = "p_adj",
up_color = "#D55E00",
down_color = "#56B4E9",
...
)
Arguments
- object
A
glystats_limma_res
object.- log2fc_cutoff
The log2 fold change cutoff. Defaults to 1.
- p_cutoff
The p-value cutoff. Defaults to 0.05.
- p_col
The column name for p-value. Defaults to "p_adj". Can also be "p" (raw p-values without multiple testing correction).
- up_color
The color for up-regulated candidates. Defaults to "#FF7777".
- down_color
The color for down-regulated candidates. Defaults to "#7DA8E6".
- ...
Other arguments passed to underlying functions.