Plots for 2-Group Differential Expression Analysis (DEA) — autoplot.glystats_ttest

Visualization for results from glystats::gly_ttest() and glystats::gly_wilcox() (glystats_ttest_res and glystats_wilcox_res objects). Draw a volcano plot.

Usage

# S3 method for class 'glystats_ttest_res'
autoplot(
  object,
  log2fc_cutoff = 1,
  p_cutoff = 0.05,
  p_col = "p_adj",
  up_color = "#D55E00",
  down_color = "#56B4E9",
  ...
)

# S3 method for class 'glystats_wilcox_res'
autoplot(
  object,
  log2fc_cutoff = 1,
  p_cutoff = 0.05,
  p_col = "p_adj",
  up_color = "#D55E00",
  down_color = "#56B4E9",
  ...
)

Arguments

object: A glystats_ttest_res or glystats_wilcox_res object.
log2fc_cutoff: The log2 fold change cutoff. Defaults to 1.
p_cutoff: The p-value cutoff. Defaults to 0.05.
p_col: The column name for p-value. Defaults to "p_adj". Can also be "p" (raw p-values without multiple testing correction).
up_color: The color for up-regulated candidates. Defaults to "#FF7777".
down_color: The color for down-regulated candidates. Defaults to "#7DA8E6".
...: Ignored.

Value

A ggplot object.