Plots for 2-Group Differential Expression Analysis (DEA)

Visualization for results from glystats::gly_ttest() and glystats::gly_wilcox() (glystats_ttest_res and glystats_wilcox_res objects). Draw a volcano plot.

Usage

# S3 method for class 'glystats_ttest_res'
autoplot(object, log2fc_cutoff = 1, p_cutoff = 0.05, p_col = "p_adj", ...)

# S3 method for class 'glystats_wilcox_res'
autoplot(object, log2fc_cutoff = 1, p_cutoff = 0.05, p_col = "p_adj", ...)

Arguments

object

A glystats_ttest_res or glystats_wilcox_res object.

log2fc_cutoff

The log2 fold change cutoff. Defaults to 1.

p_cutoff

The p-value cutoff. Defaults to 0.05.

p_col

The column name for p-value. Defaults to "p_adj". Can also be "p_val" (raw p-values without multiple testing correction).

...

Ignored.

Value

A ggplot object.