Plot Enrichment Analysis Results

Draw a enrichment analysis result plot. Currently supported data types:

• glystats_go_ora_res: Result from glystats::gly_enrich_go().

• glystats_kegg_ora_res: Result from glystats::gly_enrich_kegg().

• glystats_reactome_ora_res: Result from glystats::gly_enrich_reactome().

• glyexp_experiment: Experiment created by glyexp::experiment(). Enrichment analysis is first performed using glystats::gly_enrich_go(), glystats::gly_enrich_kegg(), or glystats::gly_enrich_reactome(), then the result is plotted.

Usage

plot_enrich(x, type = "dotplot", ...)

# S3 method for class 'glystats_go_ora_res'
plot_enrich(x, type = "dotplot", ...)

# S3 method for class 'glystats_kegg_ora_res'
plot_enrich(x, type = "dotplot", ...)

# S3 method for class 'glystats_reactome_ora_res'
plot_enrich(x, type = "dotplot", ...)

# S3 method for class 'glyexp_experiment'
plot_enrich(x, type = "dotplot", enrich_type = "go", stats_args = list(), ...)

Arguments

x

An object to be plotted.

type

The type of plot, one of "dotplot" (default), "barplot", or "network".

...

Additional arguments passed to underlying functions:

• "dotplot": enrichplot::dotplot()

• "barplot": enrichplot::barplot.enrichResult()

• "network": enrichplot::emapplot()

enrich_type

The type of enrichment analysis, one of "go" (default), "kegg", or "reactome".

stats_args

A list of keyword arguments to pass to glystats::gly_enrich_go(), glystats::gly_enrich_kegg(), or glystats::gly_enrich_reactome().

Value

A ggplot object.