Heatmap — plot_heatmap • glyvis

Draw a heatmap from a glyexp::GlycomicSE(), glyexp::GlycoproteomicSE(), or other compatible SummarizedExperiment. Heatmap of log2-transformed expression values is plotted. Before plotting, zero-variance rows and columns are filtered out to ensure robust clustering.

Usage

plot_heatmap(x, ...)

# S3 method for class 'glyexp_experiment'
plot_heatmap(x, ...)

# S3 method for class 'SummarizedExperiment'
plot_heatmap(x, ...)

Arguments

x: A supported Glycoverse data container.
...: Other arguments passed to pheatmap::pheatmap().

Value

A ggplot object.