Update glycoverse packages — glycoverse

This checks r-universe for all glycoverse packages (and optionally, their dependencies) and reports which ones have newer versions available. You can then choose to update automatically or get manual instructions.

Usage

glycoverse_update(
  recursive = FALSE,
  repos = getOption("repos"),
  dev_to_latest = NULL
)

Arguments

recursive: If TRUE, will also list all dependencies of glycoverse packages.
repos: The repositories to use to check for updates. Defaults to getOption("repos").
dev_to_latest: If TRUE, replace development versions (versions with a 4th component >= 9000, e.g., 0.1.0.9000) with the latest release versions. If FALSE, keep development versions as-is. If NULL (the default), and in interactive mode, the user will be prompted. In non-interactive mode, NULL defaults to FALSE.

Examples

if (FALSE) { # \dontrun{
glycoverse_update()
} # }