Changelog

glycoverse (development version)

glycoverse 0.2.5

New features

• Migrate from GitHub releases to r-universe for package installation. glycoverse_update() now uses pak::repo_add() and pak::pkg_install() for automatic updates.

Minor improvements and bug fixes

• Remove the Remotes field from DESCRIPTION as dependencies are now installed from r-universe.
• Update installation guide in README.

glycoverse 0.2.4

Minor improvements and bug fixes

• Fix a bug in glycoverse_update() that non-core packages were ignored.

glycoverse 0.2.3

• Fig a bug in glycoverse_deps().

glycoverse 0.2.2

Minor improvements and bug fixes

• Use the release version of glydraw.

glycoverse 0.2.1

• Remove glysmith from core dependency.

glycoverse 0.2.0

New features

• glycoverse_sitrep() only checks glycoverse packages now, including a few new packages, i.e., glydraw, glydb, glyanno, glysmith.
• Remove glyenzy from glycoverse core packages.
• glycoverse_update() now updates glycoverse packages using pak, instead of just printing the commands.

Minor improvements and bug fixes

• Fix the bug that glycoverse_deps() raised an error when recursive was TRUE.
• Fix the bug that upstream version numbers of Bioconductor dependencies could not be fetched.
• Update all dependencies to their latest versions.
• Add more packages to the end of the case study vignettes.

glycoverse 0.1.3

• Use the CRAN version of glyparse.

glycoverse 0.1.2

• Use the CRAN version of glyrepr.

glycoverse 0.1.1

• Fix a bug in glycoverse_update() where the upstream packages were not set correctly (CRAN, instead of GitHub).

glycoverse 0.1.0

• Initial GitHub release.