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Get All Derived Traits

all_traits.Rd

This function returns a named list of all derived traits. Compared to basic_traits(), this function includes derived traits with more detailed within conditions.

Usage

all_traits()

Value

A named list of derived traits.

Details

The explanations of the derived traits are as follows:

  • A1F: Proportion of fucosylated glycans within mono-antennary glycans

  • A2F: Proportion of fucosylated glycans within bi-antennary glycans

  • A3F: Proportion of fucosylated glycans within tri-antennary glycans

  • A4F: Proportion of fucosylated glycans within tetra-antennary glycans

  • A1Fc: Proportion of core-fucosylated glycans within mono-antennary glycans

  • A2Fc: Proportion of core-fucosylated glycans within bi-antennary glycans

  • A3Fc: Proportion of core-fucosylated glycans within tri-antennary glycans

  • A4Fc: Proportion of core-fucosylated glycans within tetra-antennary glycans

  • A1Fa: Proportion of arm-fucosylated glycans within mono-antennary glycans

  • A2Fa: Proportion of arm-fucosylated glycans within bi-antennary glycans

  • A3Fa: Proportion of arm-fucosylated glycans within tri-antennary glycans

  • A4Fa: Proportion of arm-fucosylated glycans within tetra-antennary glycans

  • A1SFa: Proportion of arm-fucosylated glycans within sialylated mono-antennary glycans

  • A2SFa: Proportion of arm-fucosylated glycans within sialylated bi-antennary glycans

  • A3SFa: Proportion of arm-fucosylated glycans within sialylated tri-antennary glycans

  • A4SFa: Proportion of arm-fucosylated glycans within sialylated tetra-antennary glycans

  • A1S0Fa: Proportion of arm-fucosylated glycans within asialylated mono-antennary glycans

  • A2S0Fa: Proportion of arm-fucosylated glycans within asialylated bi-antennary glycans

  • A3S0Fa: Proportion of arm-fucosylated glycans within asialylated tri-antennary glycans

  • A4S0Fa: Proportion of arm-fucosylated glycans within asialylated tetra-antennary glycans

  • A1B: Proportion of bisecting glycans within mono-antennary glycans

  • A2B: Proportion of bisecting glycans within bi-antennary glycans

  • A3B: Proportion of bisecting glycans within tri-antennary glycans

  • A4B: Proportion of bisecting glycans within tetra-antennary glycans

  • A1FcB: Proportion of bisecting glycans within core-fucosylated mono-antennary glycans

  • A2FcB: Proportion of bisecting glycans within core-fucosylated bi-antennary glycans

  • A3FcB: Proportion of bisecting glycans within core-fucosylated tri-antennary glycans

  • A4FcB: Proportion of bisecting glycans within core-fucosylated tetra-antennary glycans

  • A1Fc0B: Proportion of bisecting glycans within a-core-fucosylated mono-antennary glycans

  • A2Fc0B: Proportion of bisecting glycans within a-core-fucosylated bi-antennary glycans

  • A3Fc0B: Proportion of bisecting glycans within a-core-fucosylated tri-antennary glycans

  • A4Fc0B: Proportion of bisecting glycans within a-core-fucosylated tetra-antennary glycans

  • A1G: Average degree of galactosylation per antenna within mono-antennary glycans

  • A2G: Average degree of galactosylation per antenna within bi-antennary glycans

  • A3G: Average degree of galactosylation per antenna within tri-antennary glycans

  • A4G: Average degree of galactosylation per antenna within tetra-antennary glycans

  • A1Gt: Average degree of terminal galactose per antenna within mono-antennary glycans

  • A2Gt: Average degree of terminal galactose per antenna within bi-antennary glycans

  • A3Gt: Average degree of terminal galactose per antenna within tri-antennary glycans

  • A4Gt: Average degree of terminal galactose per antenna within tetra-antennary glycans

  • A1S: Average degree of sialylation per antenna within mono-antennary glycans

  • A2S: Average degree of sialylation per antenna within bi-antennary glycans

  • A3S: Average degree of sialylation per antenna within tri-antennary glycans

  • A4S: Average degree of sialylation per antenna within tetra-antennary glycans

  • A1GS: Average degree of sialylation per galactose within mono-antennary glycans

  • A2GS: Average degree of sialylation per galactose within bi-antennary glycans

  • A3GS: Average degree of sialylation per galactose within tri-antennary glycans

  • A4GS: Average degree of sialylation per galactose within tetra-antennary glycans

Examples

all_traits()
#> $TM
#> prop(Tp == "highmannose", na_action = "keep")
#> 
#> $TH
#> prop(Tp == "hybrid", na_action = "keep")
#> 
#> $TC
#> prop(Tp == "complex", na_action = "keep")
#> 
#> $MM
#> wmean(nM, within = (Tp == "highmannose"), na_action = "keep")
#> 
#> $CA2
#> prop(nA == 2, within = (Tp == "complex"), na_action = "keep")
#> 
#> $CA3
#> prop(nA == 3, within = (Tp == "complex"), na_action = "keep")
#> 
#> $CA4
#> prop(nA == 4, within = (Tp == "complex"), na_action = "keep")
#> 
#> $TF
#> prop(nF > 0, na_action = "keep")
#> 
#> $TFc
#> prop(nFc > 0, na_action = "keep")
#> 
#> $TFa
#> prop(nFa > 0, na_action = "keep")
#> 
#> $TB
#> prop(B, na_action = "keep")
#> 
#> $SG
#> wmean(nS/nG, na_action = "keep")
#> 
#> $GA
#> wmean(nG/nA, na_action = "keep")
#> 
#> $TS
#> prop(nS > 0, na_action = "keep")
#> 
#> $A1F
#> prop(nF > 0, within = (nA == 1), na_action = "keep")
#> 
#> $A2F
#> prop(nF > 0, within = (nA == 2), na_action = "keep")
#> 
#> $A3F
#> prop(nF > 0, within = (nA == 3), na_action = "keep")
#> 
#> $A4F
#> prop(nF > 0, within = (nA == 4), na_action = "keep")
#> 
#> $A1Fc
#> prop(nFc > 0, within = (nA == 1), na_action = "keep")
#> 
#> $A2Fc
#> prop(nFc > 0, within = (nA == 2), na_action = "keep")
#> 
#> $A3Fc
#> prop(nFc > 0, within = (nA == 3), na_action = "keep")
#> 
#> $A4Fc
#> prop(nFc > 0, within = (nA == 4), na_action = "keep")
#> 
#> $A1Fa
#> prop(nFa > 0, within = (nA == 1), na_action = "keep")
#> 
#> $A2Fa
#> prop(nFa > 0, within = (nA == 2), na_action = "keep")
#> 
#> $A3Fa
#> prop(nFa > 0, within = (nA == 3), na_action = "keep")
#> 
#> $A4Fa
#> prop(nFa > 0, within = (nA == 4), na_action = "keep")
#> 
#> $A1SFa
#> prop(nFa > 0, within = (nA == 1 & nS > 0), na_action = "keep")
#> 
#> $A2SFa
#> prop(nFa > 0, within = (nA == 2 & nS > 0), na_action = "keep")
#> 
#> $A3SFa
#> prop(nFa > 0, within = (nA == 3 & nS > 0), na_action = "keep")
#> 
#> $A4SFa
#> prop(nFa > 0, within = (nA == 4 & nS > 0), na_action = "keep")
#> 
#> $A1S0Fa
#> prop(nFa > 0, within = (nA == 1 & nS == 0), na_action = "keep")
#> 
#> $A2S0Fa
#> prop(nFa > 0, within = (nA == 2 & nS == 0), na_action = "keep")
#> 
#> $A3S0Fa
#> prop(nFa > 0, within = (nA == 3 & nS == 0), na_action = "keep")
#> 
#> $A4S0Fa
#> prop(nFa > 0, within = (nA == 4 & nS == 0), na_action = "keep")
#> 
#> $A1B
#> prop(B, within = (nA == 1), na_action = "keep")
#> 
#> $A2B
#> prop(B, within = (nA == 2), na_action = "keep")
#> 
#> $A3B
#> prop(B, within = (nA == 3), na_action = "keep")
#> 
#> $A4B
#> prop(B, within = (nA == 4), na_action = "keep")
#> 
#> $A1FcB
#> prop(B, within = (nA == 1 & nFc > 0), na_action = "keep")
#> 
#> $A2FcB
#> prop(B, within = (nA == 2 & nFc > 0), na_action = "keep")
#> 
#> $A3FcB
#> prop(B, within = (nA == 3 & nFc > 0), na_action = "keep")
#> 
#> $A4FcB
#> prop(B, within = (nA == 4 & nFc > 0), na_action = "keep")
#> 
#> $A1Fc0B
#> prop(B, within = (nA == 1 & nFc == 0), na_action = "keep")
#> 
#> $A2Fc0B
#> prop(B, within = (nA == 2 & nFc == 0), na_action = "keep")
#> 
#> $A3Fc0B
#> prop(B, within = (nA == 3 & nFc == 0), na_action = "keep")
#> 
#> $A4Fc0B
#> prop(B, within = (nA == 4 & nFc == 0), na_action = "keep")
#> 
#> $A1G
#> wmean(nG/nA, within = (nA == 1), na_action = "keep")
#> 
#> $A2G
#> wmean(nG/nA, within = (nA == 2), na_action = "keep")
#> 
#> $A3G
#> wmean(nG/nA, within = (nA == 3), na_action = "keep")
#> 
#> $A4G
#> wmean(nG/nA, within = (nA == 4), na_action = "keep")
#> 
#> $A1Gt
#> wmean(nGt/nA, within = (nA == 1), na_action = "keep")
#> 
#> $A2Gt
#> wmean(nGt/nA, within = (nA == 2), na_action = "keep")
#> 
#> $A3Gt
#> wmean(nGt/nA, within = (nA == 3), na_action = "keep")
#> 
#> $A4Gt
#> wmean(nGt/nA, within = (nA == 4), na_action = "keep")
#> 
#> $A1S
#> wmean(nS/nA, within = (nA == 1), na_action = "keep")
#> 
#> $A2S
#> wmean(nS/nA, within = (nA == 2), na_action = "keep")
#> 
#> $A3S
#> wmean(nS/nA, within = (nA == 3), na_action = "keep")
#> 
#> $A4S
#> wmean(nS/nA, within = (nA == 4), na_action = "keep")
#> 
#> $A1GS
#> wmean(nS/nG, within = (nA == 1), na_action = "keep")
#> 
#> $A2GS
#> wmean(nS/nG, within = (nA == 2), na_action = "keep")
#> 
#> $A3GS
#> wmean(nS/nG, within = (nA == 3), na_action = "keep")
#> 
#> $A4GS
#> wmean(nS/nG, within = (nA == 4), na_action = "keep")
#>