Package index • glydet

Main functions

Entry points for the package.

derive_traits(): Calculate Derived Traits
quantify_motifs(): Quantify Motifs in an Experiment

Out-of-box trait sets

Curated sets of derived traits for out-of-box use.

traits_basic() basic_traits(): Get Basic Derived Traits
traits_clerc_2018(): Get Traits in Clerc et al. 2018
traits_detailed() all_traits(): Get Detailed Derived Traits
traits_fu_2026(): Get Traits in Fu et al. 2026
traits_li_2025(): Get Traits in Li et al. 2025

Utility functions

Helper functions for trait interpretation and construction.

explain_trait() explain_traits(): Explain Derived Traits
make_trait() make_traits() experimental: Use a Large Language Model (LLM) to Create Derived Trait Functions

Trait factories

Functions for constructing custom derived traits.

prop(): Create a Proportion Trait
ratio(): Create a Ratio Trait
wmean(): Create a Weighted-Mean Trait
total(): Create a Total Abundance Trait
wsum(): Create a Weighted Sum Trait

Meta-property utilities

Functions for working with glycan meta-properties.

add_meta_properties(): Add Meta-Properties to a Glyco SummarizedExperiment
all_mp_fns(): Get All Meta-Property Functions
get_meta_properties(): Get Meta-Properties of Glycans

Meta-property functions

Functions for calculating specific glycan meta-properties.

n_glycan_type() has_bisecting() n_antennae() n_fuc() n_core_fuc() n_arm_fuc() n_gal() n_terminal_gal() n_sia() n_man(): Determine N-Glycan Key Properties