Convert experiment to SummarizedExperiment

Convert an experiment() object to a SummarizedExperiment object. This function maps the experiment structure to SummarizedExperiment format:

• expr_mat becomes the main assay

• sample_info becomes colData

• var_info becomes rowData

• meta_data becomes metadata

This legacy API is retained temporarily for compatibility. Use GlycomicSE() or GlycoproteomicSE() as the default data container.

Usage

as_se(exp, assay_name = "abundance")

Arguments

exp

An experiment() object to convert.

assay_name

Character string specifying the name for the assay. Default is "abundance".

Value

A SummarizedExperiment object.