Package index • glyexp

Experiment Creation and Conversion

GlycomicSE() experimental: Create a GlycomicSE object
GlycoproteomicSE() experimental: Create a GlycoproteomicSE object
as_glycomic_se() is_glycomic_se(): Coerce to GlycomicSE
as_glycoproteomic_se() is_glycoproteomic_se(): Coerce to GlycoproteomicSE

Experiment Inspection

summarize_experiment(): Identification overview

Dplyr-Style Manipulation

arrange_col() arrange_row(): Arrange sample or variable information
filter_col() filter_row(): Filter samples or variables of an experiment
left_join_col() inner_join_col() semi_join_col() anti_join_col() left_join_row() inner_join_row() semi_join_row() anti_join_row(): Join data to sample or variable information
mutate_col() mutate_row(): Mutate sample or variable information
rename_col() rename_row(): Rename columns in the sample or variable information tibble
select_col() select_row(): Select columns of the sample or variable information tibble
slice_col() slice_row() slice_head_col() slice_head_row() slice_tail_col() slice_tail_row() slice_sample_col() slice_sample_row() slice_max_col() slice_max_row() slice_min_col() slice_min_row(): Slice sample or variable information

Other Functions

standardize_variable(): Standardize variable IDs in an experiment
as_pseudo_glycome(): Convert a glycoproteomics experiment to a pseudo-glycome experiment

Datasets

real_experiment: Real glycoproteomics experiment
real_experiment2: Real glycomics experiment