Package index • glyexp

All functions

arrange_obs() arrange_var(): Arrange Sample or Variable Information

as_se(): Convert experiment to SummarizedExperiment

as_tibble(<glyexp_experiment>): Convert an Experiment to a Tibble

count_compositions() count_structures() count_peptides() count_glycopeptides() count_glycoforms() count_proteins() count_glycosites(): Identification overview

dim(<glyexp_experiment>) `dim<-`(<glyexp_experiment>): Dimensions of an Experiment

dimnames(<glyexp_experiment>): Dimname for Experiment

experiment(): Create a new experiment

filter_obs() filter_var(): Filter Samples or Variables of an Experiment

from_se(): Convert SummarizedExperiment to experiment

get_expr_mat(): Get the Expression Matrix of an experiment()

get_meta_data() get_exp_type() get_glycan_type(): Get the meta data of an experiment()

get_sample_info(): Get the Sample Information of an experiment()

get_var_info(): Get the Variable Information of an experiment()

is_experiment(): Check if an Object is an Experiment

left_join_obs() inner_join_obs() semi_join_obs() anti_join_obs() left_join_var() inner_join_var() semi_join_var() anti_join_var(): Join Data to Sample or Variable Information

merge(<glyexp_experiment>): Merge two experiments

mutate_obs() mutate_var(): Mutate Sample or Variable Information

n_samples() n_variables(): Get Number of Samples or Variables of an Experiment

real_experiment: Real Glycoproteomics Experiment

real_experiment2: Real Glycomics Experiment

rename_obs() rename_var(): Rename Columns in the Sample or Variable Information Tibble

samples() variables(): Get Samples or Variables of an Experiment

select_obs() select_var(): Select Columns of the Sample or Variable Information Tibble

set_meta_data() set_exp_type() set_glycan_type(): Set the meta data of an experiment()

slice_obs() slice_var() slice_head_obs() slice_head_var() slice_tail_obs() slice_tail_var() slice_sample_obs() slice_sample_var() slice_max_obs() slice_max_var() slice_min_obs() slice_min_var(): Slice Sample or Variable Information

split(<glyexp_experiment>): Split an Experiment

`[`(<glyexp_experiment>) `[<-`(<glyexp_experiment>): Subsetting experiments

toy_experiment: Toy Experiment