Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis. and related study experiments

Complete eight-component targeted heparan-sulfate disaccharide assay at 80% epiboly. Each sample is independent clutch of 100 embryos. Source Data genotype replicate counts exceed GlycoPOST metadata, so source column IDs are retained and no raw-file correspondence is asserted. Combined GAG-glycan quantitative profiles from GPST000676. 8 union features and 15 source observations are represented.

Usage

glyhub_GPST000676_GAG(
  kind = c("curated", "raw"),
  cache_dir = getOption("glyhub.cache_dir", tools::R_user_dir("glyhub", "cache")),
  refresh = FALSE,
  offline = FALSE
)

Format

A glyexp::GlycomicSE with 8 features and 15 observations. The abundance assay is in percent total HS disaccharides. rowData has no glycan_structure column because no feature has a supported structural annotation.

Source

GlycoPOST GPST000676. Figure 5 e,f. Study: https://doi.org/10.1038/s41467-026-70804-6. Repository: https://glycopost.glycosmos.org/entry/GPST000676. Quantitative source: https://media.springernature.com/full/springer-static/esm/art%3A10.1038%2Fs41467-026-70804-6/MediaObjects/41467_2026_70804_MOESM10_ESM.xlsx.

Arguments

kind: "curated" returns a data object; "raw" returns the path to a verified source archive. Raw archives are currently available for CPTAC.
cache_dir: Cache directory, defaulting to tools::R_user_dir("glyhub", "cache"). Set option glyhub.cache_dir to change the default.
refresh: Download the pinned resource again, even if cached.
offline: Prohibit downloads; require a verified local resource.

Details

Source experiments are identified in colData and original panel-specific metadata, annotations and measurements are retained in metadata. Feature identities are aligned only when supported by author identifiers or explicit molecular structures; other features retain source-specific identities. The source_coverage matrix distinguishes unmeasured combinations from measured missing values. Units: percent total HS disaccharides.

Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis.: Complete eight-component targeted heparan-sulfate disaccharide assay at 80% epiboly. Each sample is independent clutch of 100 embryos. Source Data genotype replicate counts exceed GlycoPOST metadata, so source column IDs are retained and no raw-file correspondence is asserted.

Molecular annotations retain source precision. Unresolved compositions or structures are NA; original annotations are retained in rowData. All quantitative source features are preserved.

Access

Use glyhub_load("glyhub_GPST000676_GAG") to load this dataset.