List released and locally staged datasets without downloading any files. Data assets are excluded from the package. A staged entry has no download URL and requires the maintainer's verified local cache.
Usage
glyhub_catalog(kind = c("curated", "raw", "all"))Value
A tibble containing dataset identifiers, source, file format, storage, compressed bytes, SHA-256, version, URL and dimensions. Additional metadata columns are:
exp_type:"glycomics"or"glycoproteomics".glycan_type: Glycan type recorded in the curated object.has_glycan_structures: Whether at least one non-missing typed glycan structure is available, rather than compositions alone.quant_method: Source-recorded quantification description, falling back to the assay scale or unit when no explicit method is recorded. This is descriptive text, not a controlled classification of instruments.
Raw archives inherit experiment and glycan types from their curated dataset;
structure availability and quantification descriptions are NA for raw
archives. Unavailable or outdated object metadata is also returned as NA.
Examples
glyhub_catalog()[, c("dataset", "storage", "bytes")]
#> # A tibble: 97 × 3
#> dataset storage bytes
#> <chr> <chr> <int>
#> 1 glyhub_GPST000738_N_B4GalT1 release 85324
#> 2 glyhub_GPST000738_N_ST6GAL1 release 86980
#> 3 glyhub_GPST000643_O release 136920
#> 4 glyhub_GPST000643_N release 10320
#> 5 glyhub_GPST000213_N release 273048
#> 6 glyhub_GPST000213_O release 46920
#> 7 glyhub_GPST000271_N_CAL51 release 26868
#> 8 glyhub_GPST000271_O_CAL51 release 5336
#> 9 glyhub_GPST000533_N_Released release 9584
#> 10 glyhub_GPST000533_N_Glycopeptides release 23040
#> # ℹ 87 more rows