Package index

All functions

gly_anova() gly_anova_()

One-way ANOVA for Differential Expression Analysis

gly_consensus_clustering() gly_consensus_clustering_()

Consensus Clustering for Glycomics and Glycoproteomics Data

gly_cor() gly_cor_()

Correlation Analysis for Glycomics and Glycoproteomics Data

gly_cox() gly_cox_()

Cox Proportional Hazards Model for Survival Analysis

gly_enrich_go() gly_enrich_go_() gly_enrich_kegg() gly_enrich_kegg_() gly_enrich_reactome() gly_enrich_reactome_()

GO, KEGG, and Reactome over-representation analysis (ORA)

gly_fold_change() gly_fold_change_()

Calculate fold change

gly_hclust() gly_hclust_()

Hierarchical Clustering for Glycomics and Glycoproteomics Data

gly_kmeans() gly_kmeans_()

K-means Clustering for Glycomics and Glycoproteomics Data

gly_kruskal() gly_kruskal_()

Kruskal-Wallis test for Differential Expression Analysis

gly_limma() gly_limma_()

Linear Models for Differential Expression Analysis using limma

gly_oplsda() gly_oplsda_()

Orthogonal Partial Least Squares Discriminant Analysis (OPLS-DA)

gly_pca() gly_pca_()

Principal Component Analysis (PCA)

gly_plsda() gly_plsda_()

Partial Least Squares Discriminant Analysis (PLS-DA)

gly_roc() gly_roc_()

ROC Analysis for Glycomics and Glycoproteomics Data

gly_tsne() gly_tsne_()

t-Distributed Stochastic Neighbor Embedding (t-SNE)

gly_ttest() gly_ttest_()

Two-sample t-test for Differential Expression Analysis

gly_umap() gly_umap_()

Uniform Manifold Approximation and Projection (UMAP)

gly_wgcna() gly_wgcna_()

Weighted Gene Co-expression Network Analysis (WGCNA)

gly_wilcox() gly_wilcox_()

Wilcoxon rank-sum test for Differential Expression Analysis