Convert Glycan Structures to GlyTouCan Accessions — struc_to

Match glycan structures to accessions in the bundled glydb_data.

Usage

struc_to_glytoucan(strucs)

Arguments

strucs: A glyrepr::glycan_structure() vector or a character vector of IUPAC-condensed glycan structures.

Value

A character vector of GlyTouCan accessions. Structures without a bundled match are returned as NA values in their original positions, and a warning is emitted.

Details

Missing anomeric positions are filled with glyrepr::fill_anomer_pos() in both the input and bundled structures before matching. When multiple bundled rows normalize to the same structure, the accession from the first row is returned.

Examples

struc_to_glytoucan(glydb_data$glycan_structure[1])
#> [1] "G00002CF"