This function returns a character vector of monosaccharide names of
the given type. See get_mono_type() for monosaacharide types.
Concrete furanose forms use an f after the monosaccharide stem, such as
Galf and GlcfNAc. Generic names do not encode ring form.
Less common absolute configurations use a leading D- or L-, such as
D-Fuc, L-Gul, and D-Fucf. Unprefixed names retain
their natural configurations.
Examples
available_monosaccharides()
#> [1] "Hex" "HexNAc" "HexN" "HexA" "dHex"
#> [6] "dHexNAc" "ddHex" "Pen" "NeuAc" "NeuGc"
#> [11] "gNeu" "gKdn" "gPse" "gLeg" "gAci"
#> [16] "g4eLeg" "gBac" "Hep" "gKdo" "HepA"
#> [21] "MurAc" "MurGc" "gMur" "Glc" "Man"
#> [26] "Gal" "Gul" "Alt" "All" "Tal"
#> [31] "Ido" "GlcNAc" "GalNAc" "ManNAc" "GulNAc"
#> [36] "AltNAc" "AllNAc" "TalNAc" "IdoNAc" "GlcN"
#> [41] "ManN" "GalN" "GulN" "AltN" "AllN"
#> [46] "TalN" "IdoN" "GlcA" "ManA" "GalA"
#> [51] "GulA" "AltA" "AllA" "TalA" "IdoA"
#> [56] "Fuc" "Qui" "Rha" "6dGul" "6dAlt"
#> [61] "6dTal" "QuiNAc" "RhaNAc" "6dAltNAc" "6dTalNAc"
#> [66] "FucNAc" "Oli" "Tyv" "Abe" "Par"
#> [71] "Dig" "Col" "Ara" "Lyx" "Xyl"
#> [76] "Rib" "Neu5Ac" "Neu5Gc" "Neu" "Kdn"
#> [81] "Pse" "Leg" "Aci" "4eLeg" "Bac"
#> [86] "LDmanHep" "Kdo" "Dha" "DDmanHep" "MurNAc"
#> [91] "MurNGc" "Mur" "Api" "Fru" "Tag"
#> [96] "Sor" "Psi" "Glcf" "Manf" "Galf"
#> [101] "Gulf" "Altf" "Allf" "Talf" "Idof"
#> [106] "GlcfNAc" "GalfNAc" "ManfNAc" "GulfNAc" "AltfNAc"
#> [111] "AllfNAc" "TalfNAc" "IdofNAc" "GlcfN" "ManfN"
#> [116] "GalfN" "GulfN" "AltfN" "AllfN" "TalfN"
#> [121] "IdofN" "GlcfA" "ManfA" "GalfA" "GulfA"
#> [126] "AltfA" "AllfA" "TalfA" "IdofA" "Fucf"
#> [131] "Quif" "Rhaf" "6dGulf" "6dAltf" "6dTalf"
#> [136] "QuifNAc" "RhafNAc" "6dAltfNAc" "6dTalfNAc" "FucfNAc"
#> [141] "Olif" "Tyvf" "Abef" "Parf" "Digf"
#> [146] "Colf" "Araf" "Lyxf" "Xylf" "Ribf"
#> [151] "Neuf5Ac" "Neuf5Gc" "Neuf" "Kdnf" "Psef"
#> [156] "Legf" "Acif" "4eLegf" "Bacf" "LDmanHepf"
#> [161] "Kdof" "Dhaf" "DDmanHepf" "MurfNAc" "MurfNGc"
#> [166] "Murf" "Apif" "Fruf" "Tagf" "Sorf"
#> [171] "Psif" "L-Glc" "L-Man" "L-Gal" "L-Gul"
#> [176] "D-Alt" "L-All" "L-Tal" "D-Ido" "L-GlcNAc"
#> [181] "L-GalNAc" "L-ManNAc" "L-GulNAc" "D-AltNAc" "L-AllNAc"
#> [186] "L-TalNAc" "D-IdoNAc" "L-GlcN" "L-ManN" "L-GalN"
#> [191] "L-GulN" "D-AltN" "L-AllN" "L-TalN" "D-IdoN"
#> [196] "L-GlcA" "L-ManA" "L-GalA" "L-GulA" "D-AltA"
#> [201] "L-AllA" "L-TalA" "D-IdoA" "D-Fuc" "L-Qui"
#> [206] "D-Rha" "L-6dGul" "D-6dAlt" "L-6dTal" "L-QuiNAc"
#> [211] "D-RhaNAc" "D-6dAltNAc" "L-6dTalNAc" "D-FucNAc" "L-Oli"
#> [216] "L-Tyv" "L-Abe" "L-Par" "L-Dig" "D-Col"
#> [221] "D-Ara" "L-Lyx" "L-Xyl" "L-Rib" "L-Neu5Ac"
#> [226] "L-Neu5Gc" "L-Kdn" "L-Bac" "L-Kdo" "L-Dha"
#> [231] "L-MurNAc" "L-MurNGc" "L-Mur" "D-Api" "L-Fru"
#> [236] "L-Tag" "D-Sor" "L-Psi" "L-Glcf" "L-Manf"
#> [241] "L-Galf" "L-Gulf" "D-Altf" "L-Allf" "L-Talf"
#> [246] "D-Idof" "L-GlcfNAc" "L-GalfNAc" "L-ManfNAc" "L-GulfNAc"
#> [251] "D-AltfNAc" "L-AllfNAc" "L-TalfNAc" "D-IdofNAc" "L-GlcfN"
#> [256] "L-ManfN" "L-GalfN" "L-GulfN" "D-AltfN" "L-AllfN"
#> [261] "L-TalfN" "D-IdofN" "L-GlcfA" "L-ManfA" "L-GalfA"
#> [266] "L-GulfA" "D-AltfA" "L-AllfA" "L-TalfA" "D-IdofA"
#> [271] "D-Fucf" "L-Quif" "D-Rhaf" "L-6dGulf" "D-6dAltf"
#> [276] "L-6dTalf" "L-QuifNAc" "D-RhafNAc" "D-6dAltfNAc" "L-6dTalfNAc"
#> [281] "D-FucfNAc" "L-Olif" "L-Tyvf" "L-Abef" "L-Parf"
#> [286] "L-Digf" "D-Colf" "D-Araf" "L-Lyxf" "L-Xylf"
#> [291] "L-Ribf" "L-Neuf5Ac" "L-Neuf5Gc" "L-Kdnf" "L-Bacf"
#> [296] "L-Kdof" "L-Dhaf" "L-MurfNAc" "L-MurfNGc" "L-Murf"
#> [301] "D-Apif" "L-Fruf" "L-Tagf" "D-Sorf" "L-Psif"
available_monosaccharides("concrete")
#> [1] "Glc" "Man" "Gal" "Gul" "Alt"
#> [6] "All" "Tal" "Ido" "GlcNAc" "GalNAc"
#> [11] "ManNAc" "GulNAc" "AltNAc" "AllNAc" "TalNAc"
#> [16] "IdoNAc" "GlcN" "ManN" "GalN" "GulN"
#> [21] "AltN" "AllN" "TalN" "IdoN" "GlcA"
#> [26] "ManA" "GalA" "GulA" "AltA" "AllA"
#> [31] "TalA" "IdoA" "Fuc" "Qui" "Rha"
#> [36] "6dGul" "6dAlt" "6dTal" "QuiNAc" "RhaNAc"
#> [41] "6dAltNAc" "6dTalNAc" "FucNAc" "Oli" "Tyv"
#> [46] "Abe" "Par" "Dig" "Col" "Ara"
#> [51] "Lyx" "Xyl" "Rib" "Neu5Ac" "Neu5Gc"
#> [56] "Neu" "Kdn" "Pse" "Leg" "Aci"
#> [61] "4eLeg" "Bac" "LDmanHep" "Kdo" "Dha"
#> [66] "DDmanHep" "MurNAc" "MurNGc" "Mur" "Api"
#> [71] "Fru" "Tag" "Sor" "Psi" "Glcf"
#> [76] "Manf" "Galf" "Gulf" "Altf" "Allf"
#> [81] "Talf" "Idof" "GlcfNAc" "GalfNAc" "ManfNAc"
#> [86] "GulfNAc" "AltfNAc" "AllfNAc" "TalfNAc" "IdofNAc"
#> [91] "GlcfN" "ManfN" "GalfN" "GulfN" "AltfN"
#> [96] "AllfN" "TalfN" "IdofN" "GlcfA" "ManfA"
#> [101] "GalfA" "GulfA" "AltfA" "AllfA" "TalfA"
#> [106] "IdofA" "Fucf" "Quif" "Rhaf" "6dGulf"
#> [111] "6dAltf" "6dTalf" "QuifNAc" "RhafNAc" "6dAltfNAc"
#> [116] "6dTalfNAc" "FucfNAc" "Olif" "Tyvf" "Abef"
#> [121] "Parf" "Digf" "Colf" "Araf" "Lyxf"
#> [126] "Xylf" "Ribf" "Neuf5Ac" "Neuf5Gc" "Neuf"
#> [131] "Kdnf" "Psef" "Legf" "Acif" "4eLegf"
#> [136] "Bacf" "LDmanHepf" "Kdof" "Dhaf" "DDmanHepf"
#> [141] "MurfNAc" "MurfNGc" "Murf" "Apif" "Fruf"
#> [146] "Tagf" "Sorf" "Psif" "L-Glc" "L-Man"
#> [151] "L-Gal" "L-Gul" "D-Alt" "L-All" "L-Tal"
#> [156] "D-Ido" "L-GlcNAc" "L-GalNAc" "L-ManNAc" "L-GulNAc"
#> [161] "D-AltNAc" "L-AllNAc" "L-TalNAc" "D-IdoNAc" "L-GlcN"
#> [166] "L-ManN" "L-GalN" "L-GulN" "D-AltN" "L-AllN"
#> [171] "L-TalN" "D-IdoN" "L-GlcA" "L-ManA" "L-GalA"
#> [176] "L-GulA" "D-AltA" "L-AllA" "L-TalA" "D-IdoA"
#> [181] "D-Fuc" "L-Qui" "D-Rha" "L-6dGul" "D-6dAlt"
#> [186] "L-6dTal" "L-QuiNAc" "D-RhaNAc" "D-6dAltNAc" "L-6dTalNAc"
#> [191] "D-FucNAc" "L-Oli" "L-Tyv" "L-Abe" "L-Par"
#> [196] "L-Dig" "D-Col" "D-Ara" "L-Lyx" "L-Xyl"
#> [201] "L-Rib" "L-Neu5Ac" "L-Neu5Gc" "L-Kdn" "L-Bac"
#> [206] "L-Kdo" "L-Dha" "L-MurNAc" "L-MurNGc" "L-Mur"
#> [211] "D-Api" "L-Fru" "L-Tag" "D-Sor" "L-Psi"
#> [216] "L-Glcf" "L-Manf" "L-Galf" "L-Gulf" "D-Altf"
#> [221] "L-Allf" "L-Talf" "D-Idof" "L-GlcfNAc" "L-GalfNAc"
#> [226] "L-ManfNAc" "L-GulfNAc" "D-AltfNAc" "L-AllfNAc" "L-TalfNAc"
#> [231] "D-IdofNAc" "L-GlcfN" "L-ManfN" "L-GalfN" "L-GulfN"
#> [236] "D-AltfN" "L-AllfN" "L-TalfN" "D-IdofN" "L-GlcfA"
#> [241] "L-ManfA" "L-GalfA" "L-GulfA" "D-AltfA" "L-AllfA"
#> [246] "L-TalfA" "D-IdofA" "D-Fucf" "L-Quif" "D-Rhaf"
#> [251] "L-6dGulf" "D-6dAltf" "L-6dTalf" "L-QuifNAc" "D-RhafNAc"
#> [256] "D-6dAltfNAc" "L-6dTalfNAc" "D-FucfNAc" "L-Olif" "L-Tyvf"
#> [261] "L-Abef" "L-Parf" "L-Digf" "D-Colf" "D-Araf"
#> [266] "L-Lyxf" "L-Xylf" "L-Ribf" "L-Neuf5Ac" "L-Neuf5Gc"
#> [271] "L-Kdnf" "L-Bacf" "L-Kdof" "L-Dhaf" "L-MurfNAc"
#> [276] "L-MurfNGc" "L-Murf" "D-Apif" "L-Fruf" "L-Tagf"
#> [281] "D-Sorf" "L-Psif"