Package index • glyrepr

Glycan Composition and Structure Creation

glycan_composition() is_glycan_composition(): Create a Glycan Composition
as_glycan_composition(): Convert to Glycan Composition
glycan_structure() is_glycan_structure(): Create a Glycan Structure Vector
as_glycan_structure(): Convert to Glycan Structure Vector
structure_nodes() structure_edges() structure_from_tibbles(): Convert Glycan Structures to Graph Tables

Glycan Composition and Structure Inspection

count_mono(): Get the Number of Monosaccharides
get_anomer(): Get the Anomeric information
get_mono_type(): Get Monosaccharide Types
get_structure_graphs(): Access Individual Glycan Structures
has_linkages(): Determine if a Glycan Structure has Linkages
structure_nodes() structure_edges() structure_from_tibbles(): Convert Glycan Structures to Graph Tables
structure_to_iupac(): Convert Glycan Structure to IUPAC-like Sequence
get_structure_level(): Get the Structure Resolution Levels

Low-Level Glycan Graph Infrastructure

Developer-facing functions for validating and canonicalizing glycan graphs, generating IUPAC-condensed keys, and assembling trusted structure vectors.

validate_glycan_graph(): Validate a Glycan Graph
canonicalize_glycan_graph(): Canonicalize a Glycan Graph
validate_glycan_graph_vector(): Validate Compatibility Across Glycan Graphs
graph_to_iupac(): Generate IUPAC-Condensed from a Glycan Graph
new_glycan_structure(): Construct a Glycan Structure Vector from Trusted Data

Glycan Composition and Structure Manipulation

convert_to_generic(): Convert Monosaccharides to Generic Type
fill_anomer_pos(): Fill Anomer Positions
remove_linkages(): Remove All Linkages from a Glycan
remove_substituents(): Remove All Substituents from a Glycan
reduce_structure_level(): Reduce a Glycan Structure to a Lower Resolution Level
simap() simap_vec() simap_lgl() simap_int() simap_dbl() simap_chr() simap_structure(): Map Functions Over Glycan Structure Vectors with Indices
smap() smap_vec() smap_lgl() smap_int() smap_dbl() smap_chr() smap_structure(): Map Functions Over Glycan Structure Vectors
smap2() smap2_vec() smap2_lgl() smap2_int() smap2_dbl() smap2_chr() smap2_structure(): Map Functions Over Two Glycan Structure Vectors
ssome() severy() snone(): Test Predicates on Glycan Structure Vectors
smap_unique(): Apply Function to Unique Structures Only
spmap() spmap_vec() spmap_lgl() spmap_int() spmap_dbl() spmap_chr() spmap_structure(): Map Functions Over Glycan Structure Vectors and Multiple Arguments

Example Glycan Structures

n_glycan_core() o_glycan_core_1() o_glycan_core_2(): Example Glycan Structures

Helper Functions

available_monosaccharides(): Get Available Monosaacharides
available_substituents(): Available Substituents
infer_anomer_pos() get_anomer_pos(): Infer Anomer Positions
is_known_monosaccharide(): Check if a Monosaccharide is Known
possible_linkages(): Generate Possible Linkages
valid_linkages(): Check if Linkages are Valid